Categorical Unification of Jordan Holder Theorems
This does not really involve any category theory, but perhaps it is useful to note the following general setting for the Jordan-Hölder theorem.
For $G$ a group and $\Omega$ a set, a group with operators is $(G, \Omega)$ equipped with an action $\Omega \times G \rightarrow G$: $(\omega,g) \mapsto g^\omega$ such that $(gh)^{\omega} = g^{\omega} h^{\omega}$ for all $\omega \in \Omega$ and $g, h \in G$.
See the Wikipedia article for more information about groups with operators: link.
The point is that the Jordan-Hölder theorem holds for a group with operators, and it seems to have most Jordan-Hölder type theorems as a special case. These include for example the Jordan-Hölder theorems for groups and modules over a ring. Also, by taking $\Omega = G$ with conjugation action, you get results about chief series and chief factors of $G$.
There are various generalizations of the Jordan-Hölder theorem. Beyond groups and groups with operators it holds for any equational theory which contains a Mal'cev operation. This means that from the given operations one can form a ternary operation $m(x,y,z)$ satisfying $m(x,x,z)=z$ and $m(x,z,z)=x$ for all $x,y,z$. Every equational theory containing a group operation is an example since $m(x,y,z)=xy^{-1}z$ has the Mal'cev property. Another example not of that type would be the class of Heyting algebras. A non-example is the class of lattices.
The fact that every equational theory containing a Mal'cev operation satisfies the Jordan-Hölder theorem has been proved by Lambek in Goursat's theorem and the Zassenhaus lemma. Canad. J. Math. 10 (1958) 45–56. It is my impression that the Mal'cev condition is pretty much optimal in this context.
The JH-theorem clearly also holds in abelian categories but that is not covered by Lambek's theorem above. A common generalization has been achieved by Carboni-Lambek-Pedicchio with the notion of a Mal'cev category (in Diagram chasing in Mal’cev categories, J. Pure Appl. Algebra 69 (1991) 271–284). These are exact categories (in the sense of Barr, not Quillen!) which have the curious property that every reflexive relation is already an equivalence relation. The category of models of an equationial theory with a Mal'cev operation would be an example (that's an amusing exercise). The category should also have a $0$-object in order to be able to define kernels. Then one can show that then all objects of finite length have the JH-property. A proof has been given in F. Knop: Tensor envelopes of regular categories. Advances in Mathematics 214 (2007) 571-617 even though the fact must have been at least folklore.
There's also the work of Francis Borceux and Marco Grandis,
Jordan-Hölder, modularity and distributivity in non-commutative algebra, J. Pure Appl. Algebra 208 (2007), no. 2, 665-689, doi.
There the authors prove a Jordan-Hölder theorem (4.4) for all 'weakly exact' categories (1.2).