DESeq pipeline code example

Example: deseq2 output explained

Column  Description
1   Gene Identifiers
2   mean normalised counts, averaged over all samples from both conditions
3   the logarithm (to basis 2) of the fold change (See the note in inputs section)
4   standard error estimate for the log2 fold change estimate
5   Wald statistic
6   p value for the statistical significance of this change
7   p value adjusted for multiple testing with the Benjamini-Hochberg procedure which controls false discovery rate (FDR)