Gradle duplicate entry error: META-INF/MANIFEST.MF (Or how to delete a file from jar)

As Rajen Raiyarela said, go to File->Project Structure->Project->Android Gradle Plugin Version and downgrade it from 3.5.2 to 3.5.1.

Set project dependencies to:

classpath 'com.android.tools.build:gradle:3.5.3'

or latest one.

Note: by doing this, my problem has been resolved.

This issue is happening because of duplicate dependencies.
Check for multiple dependencies in the Gradle app.