How can I use Emacs Flymake mode for python with pyflakes and pylint checking code?

Well, flymake is just looking for a executable command thats output lines in a predefined format. You can make a shell script for example that will call successively all the checkers you want...

You must also make sure that your script ends by returning errorlevel 0. So this is an example:

This is what I've done in a "pycheckers" script:

#!/bin/bash

epylint "$1" 2>/dev/null
pyflakes "$1"
pep8 --ignore=E221,E701,E202 --repeat "$1"
true

For the emacs lisp part:

(when (load "flymake" t)
  (defun flymake-pyflakes-init ()
    (let* ((temp-file (flymake-init-create-temp-buffer-copy
                       'flymake-create-temp-inplace))
           (local-file (file-relative-name
                        temp-file
                        (file-name-directory buffer-file-name))))
      (list "pycheckers"  (list local-file))))
  (add-to-list 'flymake-allowed-file-name-masks
               '("\\.py\\'" flymake-pyflakes-init)))

Usually one can enable flymake mode in the python-mode-hook. Unfortunately that causes issues with things like py-execute-buffer which create temporary buffers which invoke the hook and then cause flymake mode to hiccup because of the lack of "real file". The solution is to modify the conditions where you add the hook:- e.g mine is:

(add-hook 'python-mode-hook 
      (lambda () 
        (unless (eq buffer-file-name nil) (flymake-mode 1)) ;dont invoke flymake on temporary buffers for the interpreter
        (local-set-key [f2] 'flymake-goto-prev-error)
        (local-set-key [f3] 'flymake-goto-next-error)
        ))