How do you fix "code object is not signed at all In subcomponent:" in Xcode 6, Mac OS X Yosemite or Mavericks?

For me I had to go to the Project build settings and set Other Code Signing Flags to --deep. The problem was that my framework in the project was not signed.

The problem was that the Framework, Paddle.framework, became corrupt. The symlinks were resolved to the files they were pointed to, so, compilation worked just fine, but signing didn't.

Re-downloading the framework and copying it into the project fixed the problem.

For me the solution was to re-Add a resource folder (checking Create groups instead of create folder references).