How to add footnotes to GitHub-flavoured Markdown?

Expanding a little bit on the previous answer, you can make the footnote links clickable here as well. First define the footnote at the bottom like this

<a name="myfootnote1">1</a>: Footnote content goes here

Then reference it at some other place in the document like this

<sup>[1](#myfootnote1)</sup>

GitHub Flavored Markdown doesn't support footnotes, but you can manually fake it¹ with Unicode characters or superscript tags, e.g. <sup>1</sup>.

¹Of course this isn't ideal, as you are now responsible for maintaining the numbering of your footnotes. It works reasonably well if you only have one or two, though.