How to import a csv file using python with headers intact, where first column is a non-numerical

For Python 3

Remove the rb argument and use either r or don't pass argument (default read mode).

with open( <path-to-file>, 'r' ) as theFile:
    reader = csv.DictReader(theFile)
    for line in reader:
        # line is { 'workers': 'w0', 'constant': 7.334, 'age': -1.406, ... }
        # e.g. print( line[ 'workers' ] ) yields 'w0'
        print(line)

For Python 2

import csv
with open( <path-to-file>, "rb" ) as theFile:
    reader = csv.DictReader( theFile )
    for line in reader:
        # line is { 'workers': 'w0', 'constant': 7.334, 'age': -1.406, ... }
        # e.g. print( line[ 'workers' ] ) yields 'w0'

Python has a powerful built-in CSV handler. In fact, most things are already built in to the standard library.


Python's csv module handles data row-wise, which is the usual way of looking at such data. You seem to want a column-wise approach. Here's one way of doing it.

Assuming your file is named myclone.csv and contains

workers,constant,age
w0,7.334,-1.406
w1,5.235,-4.936
w2,3.2225,-1.478
w3,0,0

this code should give you an idea or two:

>>> import csv
>>> f = open('myclone.csv', 'rb')
>>> reader = csv.reader(f)
>>> headers = next(reader, None)
>>> headers
['workers', 'constant', 'age']
>>> column = {}
>>> for h in headers:
...    column[h] = []
...
>>> column
{'workers': [], 'constant': [], 'age': []}
>>> for row in reader:
...   for h, v in zip(headers, row):
...     column[h].append(v)
...
>>> column
{'workers': ['w0', 'w1', 'w2', 'w3'], 'constant': ['7.334', '5.235', '3.2225', '0'], 'age': ['-1.406', '-4.936', '-1.478', '0']}
>>> column['workers']
['w0', 'w1', 'w2', 'w3']
>>> column['constant']
['7.334', '5.235', '3.2225', '0']
>>> column['age']
['-1.406', '-4.936', '-1.478', '0']
>>>

To get your numeric values into floats, add this

converters = [str.strip] + [float] * (len(headers) - 1)

up front, and do this

for h, v, conv in zip(headers, row, converters):
  column[h].append(conv(v))

for each row instead of the similar two lines above.


You can use pandas library and reference the rows and columns like this:

import pandas as pd

input = pd.read_csv("path_to_file");

#for accessing ith row:
input.iloc[i]

#for accessing column named X
input.X

#for accessing ith row and column named X
input.iloc[i].X

Tags:

Python

Csv