how to increase the limit for max.print in R

See ?options:

options(max.print=999999)

Use the options command, e.g. options(max.print=1000000).

See ?options:

 ‘max.print’: integer, defaulting to ‘99999’.  ‘print’ or ‘show’
      methods can make use of this option, to limit the amount of
      information that is printed, to something in the order of
      (and typically slightly less than) ‘max.print’ _entries_.

set the function options(max.print=10000) in top of your program. since you want intialize this before it works. It is working for me.