How to update PATH variable permanently from Windows command line?

The documentation on how to do this can be found on MSDN. The key extract is this:

To programmatically add or modify system environment variables, add them to the HKEY_LOCAL_MACHINE\System\CurrentControlSet\Control\Session Manager\Environment registry key, then broadcast a WM_SETTINGCHANGE message with lParam set to the string "Environment". This allows applications, such as the shell, to pick up your updates.

Note that your application will need elevated admin rights in order to be able to modify this key.

You indicate in the comments that you would be happy to modify just the per-user environment. Do this by editing the values in HKEY_CURRENT_USER\Environment. As before, make sure that you broadcast a WM_SETTINGCHANGE message.

You should be able to do this from your Java application easily enough using the JNI registry classes.

You can use:

setx PATH "%PATH%;C:\\Something\\bin"

However, setx will truncate the stored string to 1024 bytes, potentially corrupting the PATH.

/M will change the PATH in HKEY_LOCAL_MACHINE instead of HKEY_CURRENT_USER. In other words, a system variable, instead of the user's. For example:

SETX /M PATH "%PATH%;C:\your path with spaces"

You have to keep in mind, the new PATH is not visible in your current cmd.exe.

But if you look in the registry or on a new cmd.exe with "set p" you can see the new value.