How do I change the formatting of numbers on an axis with ggplot?

x <- rnorm(10) * 100000
y <- seq(0, 1, length = 10)
p <- qplot(x, y)
library(scales)
p + scale_x_continuous(labels = comma)

I also found another way of doing this that gives proper 'x10(superscript)5' notation on the axes. I'm posting it here in the hope it might be useful to some. I got the code from here so I claim no credit for it, that rightly goes to Brian Diggs.

fancy_scientific <- function(l) {
     # turn in to character string in scientific notation
     l <- format(l, scientific = TRUE)
     # quote the part before the exponent to keep all the digits
     l <- gsub("^(.*)e", "'\\1'e", l)
     # turn the 'e+' into plotmath format
     l <- gsub("e", "%*%10^", l)
     # return this as an expression
     parse(text=l)
}

Which you can then use as

ggplot(data=df, aes(x=x, y=y)) +
   geom_point() +
   scale_y_continuous(labels=fancy_scientific) 

Another option is to format your axis tick labels with commas is by using the package scales, and add

 scale_y_continuous(name="Fluorescent intensity/arbitrary units", labels = comma)

to your ggplot statement.

If you don't want to load the package, use:

scale_y_continuous(name="Fluorescent intensity/arbitrary units", labels = scales::comma)