How to create compressed Zip archive using ZipOutputStream so that method getSize() of ZipEntry returns correct size?

You can only set the uncompressed size if you also set the CRC and compressed size as well. Since these information are stored before in a header before the actual data and ZipOutputStream can’t rewind arbitrary OutputStreams, it can’t calculate these values while writing and store them afterwards (but it will calculate them for verifying the provided values).

Here is a solution for calculating the values in one pass before the writing. It utilizes the fact that you can rewind a stream if it is backed by a file.

public static void main(String[] args) throws IOException {
    File infile  = new File("test_file.pdf");
    File outfile = new File("test.zip");
    try (FileInputStream  fis = new FileInputStream(infile);
         FileOutputStream fos = new FileOutputStream(outfile);
         ZipOutputStream  zos = new ZipOutputStream(fos) ) {

        byte[]  buffer = new byte[1024];
        ZipEntry entry = new ZipEntry("data");
        precalc(entry, fis.getChannel());
        zos.putNextEntry(entry);
        for(int bytesRead; (bytesRead = fis.read(buffer)) >= 0; )
            zos.write(buffer, 0, bytesRead);
        zos.closeEntry();
    }

    try(FileInputStream fin = new FileInputStream(outfile);
        ZipInputStream  zis = new ZipInputStream(fin) ) {

        ZipEntry entry = zis.getNextEntry();
        System.out.println("Entry size: " + entry.getSize());
        System.out.println("Compressed size: " + entry.getCompressedSize());
        System.out.println("CRC: " + entry.getCrc());
        zis.closeEntry();
    }
}

private static void precalc(ZipEntry entry, FileChannel fch) throws IOException {
    long uncompressed = fch.size();
    int method = entry.getMethod();
    CRC32 crc = new CRC32();
    Deflater def;
    byte[] drain;
    if(method != ZipEntry.STORED) {
        def   = new Deflater(Deflater.DEFAULT_COMPRESSION, true);
        drain = new byte[1024];
    }
    else {
        def   = null;
        drain = null;
    }
    ByteBuffer buf = ByteBuffer.allocate((int)Math.min(uncompressed, 4096));
    for(int bytesRead; (bytesRead = fch.read(buf)) != -1; buf.clear()) {
        crc.update(buf.array(), buf.arrayOffset(), bytesRead);
        if(def!=null) {
            def.setInput(buf.array(), buf.arrayOffset(), bytesRead);
            while(!def.needsInput()) def.deflate(drain, 0, drain.length);
        }
    }
    entry.setSize(uncompressed);
    if(def!=null) {
        def.finish();
        while(!def.finished()) def.deflate(drain, 0, drain.length);
        entry.setCompressedSize(def.getBytesWritten());
    }
    entry.setCrc(crc.getValue());
    fch.position(0);
}

It handles both, uncompressed and compressed entries, but unfortunately, only with the default compression level as ZipOutputStream has no method for querying the current level. So if you change the compression level you have to keep the precalc code in sync. Alternatively, you could move the logic into a subclass of ZipOutputStream and use the same Deflater so it will automatically have the same configuration.

A solution working with arbitrary source input streams would require buffering of the entire entry data.