The primary reference could not be resolved because it was built against a higher version of the .NET framework than the currently targeted framework
Apparently if you have only .NET Frameworks 4.0 installed, you can add as a reference a .NET assembly that targets 4.5 to a project that targets .NET 4.0. This will compile and run with no errors.
As soon as you install .NET Frameworks 4.5, compile will fail. The solution is to target your project for .NET Framework 4.5 or get a version of the referenced assembly that targets .NET 4.0.
.NET 4.5 is a drop in replacement for 4.0. 4.0 doesn't know anything about 4.5, and I assume it is just looking at the first digit of the version number which for 4.0 or 4.5 is the same, so it is allowed to compile. As soon as you install 4.5, your 4.0 projects are compiled using the 4.5 Frameworks and it now knows about 4.5 and complains.