IntelliJ IDEA JDK configuration on Mac OS

If you are on Mac OS X or Ubuntu, the problem is caused by the symlinks to the JDK. File | Invalidate Caches should help. If it doesn't, specify the JDK path to the direct JDK Home folder, not a symlink.

Invalidate Caches menu item is available under IntelliJ IDEA File menu.

Direct JDK path after the recent Apple Java update is:

/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home

In IDEA you can configure the new JSDK in File | Project Structure, select SDKs on the left, then press [+] button, then specify the above JDK home path, you should get something like this:

Just tried this recently and when trying to select the JDK... /System/Library/Java/JavaVirtualMachines/ appears as empty when opening&selecting through IntelliJ. Therefore i couldn't select the JDK...

I've found that to workaround this, when the finder windows open (pressing [+] JDK) just use the shortcut Shift + CMD + G to specify the path. (/System/Library/Java/JavaVirtualMachines/1.6.0.jdk in my case)

And voila, IntelliJ can find everything from that point on.