jQuery $(document).ready () fires twice
It happened to me also, but I realized that the script had been included twice because of a bad merge.
The ready event cannot fire twice. What is more than likely happening is you have code that is moving or manipulating the element that the code is contained within which causes the browser to re-execute the script block.
This can be avoided by including script tags in the <head> or before the closing </body> tag and not using $('body').wrapInner();. using $('body').html($('body').html().replace(...)); has the same effect.