Latex & Markdown files
You have to use the option pipeTables
:
\documentclass{article}
\usepackage[blankBeforeHeading, html, fencedCode,
inlineFootnotes, citations, definitionLists,
hashEnumerators, smartEllipses, hybrid, pipeTables]{markdown}
\usepackage{filecontents}
\begin{filecontents*}{\jobname.md}
This file is generated as a test for tables:
| Version | Date |Paragraph| Description | Author|
|:--------|:------------|---------|:------------------|-------|
| 1.0 | 12/Abril/19 | All | initial commit | RACG |
| 1.0 | 12/Abril/19 | All | initial commit | RACG |
\end{filecontents*}
\begin{document}
\markdownInput{\jobname.md}
\end{document}
Maybe You should take a look at Pandoc: https://pandoc.org/ and convert .md files to LaTeX files?