python- how to display size of all variables
A bit more code, but works in Python 3 and gives a sorted, human readable output:
import sys
def sizeof_fmt(num, suffix='B'):
''' by Fred Cirera, https://stackoverflow.com/a/1094933/1870254, modified'''
for unit in ['','Ki','Mi','Gi','Ti','Pi','Ei','Zi']:
if abs(num) < 1024.0:
return "%3.1f %s%s" % (num, unit, suffix)
num /= 1024.0
return "%.1f %s%s" % (num, 'Yi', suffix)
for name, size in sorted(((name, sys.getsizeof(value)) for name, value in locals().items()),
key= lambda x: -x[1])[:10]:
print("{:>30}: {:>8}".format(name, sizeof_fmt(size)))
Example output:
umis: 3.6 GiB
barcodes_sorted: 3.6 GiB
barcodes_idx: 3.6 GiB
barcodes: 3.6 GiB
cbcs: 3.6 GiB
reads_per_umi: 1.3 GiB
umis_per_cbc: 59.1 MiB
reads_per_cbc: 59.1 MiB
_40: 12.1 KiB
_: 1.6 KiB
You can iterate over both the key and value of a dictionary using .items()
from __future__ import print_function # for Python2
import sys
local_vars = list(locals().items())
for var, obj in local_vars:
print(var, sys.getsizeof(obj))