Reduce multiple blank lines to single (Pythonically)

This is a reach, but perhaps some of the lines aren't completely blank (i.e. they have only whitespace characters that give the appearance of blankness). You could try removing all possible whitespace between newlines.

re.sub(r'(\n\s*)+\n+', '\n\n', sourceFileContents)

Edit: realized the second '+' was superfluous, as the \s* will catch newlines between the first and last. We just want to make sure the last character is definitely a newline so we don't remove leading whitespace from a line with other content.

re.sub(r'(\n\s*)+\n', '\n\n', sourceFileContents)

Edit 2

re.sub(r'\n\s*\n', '\n\n', sourceFileContents)

Should be an even simpler solution. We really just want to a catch any possible space (which includes intermediate newlines) between our two anchor newlines that will make the single blank line and collapse it down to just the two newlines.

Your code works for me. Maybe there is a chance of carriage return \r would be present.

re.sub(r'[\r\n][\r\n]{2,}', '\n\n', sourceFileContents)