Running java with JAVA_OPTS env variable has no effect

You can setup _JAVA_OPTIONS instead of JAVA_OPTS. This should work without $_JAVA_OPTIONS.

I don't know of any JVM that actually checks the JAVA_OPTS environment variable. Usually this is used in scripts which launch the JVM and they usually just add it to the java command-line.

The key thing to understand here is that arguments to java that come before the -jar analyse.jar bit will only affect the JVM and won't be passed along to your program. So, modifying the java line in your script to:

java $JAVA_OPTS -jar analyse.jar $*

Should "just work".