Solving the matrix equation $X^tA+A^tX=0$ for $X$ in terms of $A$
Edit: you might look into methods for solving Sylvester Equations which are of the form $AX+XB=C$.
General Case
I doubt this is the best way to solve the equation, but it is at least one way to solve it.
Write, $$ X = \begin{bmatrix} | & | & & | \\ x_1 & x_2 & & x_n \\ | & | & & | \\ \end{bmatrix} , ~~ A = \begin{bmatrix} | & | & & | \\ a_1 & a_2 & & a_n \\ | & | & & | \\ \end{bmatrix} $$
Then the $i,j$ entry of $X^TA+A^TX = 0$ gives, $$ x_i^Ta_j + a_i^Tx_j = a_j^Tx_i + a_i^Tx_j = 0 $$
We can rewrite this as a matrix vector equation $\tilde{A}x = 0$ $$ \begin{bmatrix} a_1^T & & & & \\ a_2^T & a_1^T & & & \\ a_3^T & & a_1^T & & \\ \vdots & & &\ddots & \\ a_n^T & & & & a_1^T \\ \hline a_2^T & a_1^T & & \cdots & \\ & a_2^T \\ & a_3^T & a_2^T & & \\ & \vdots & & \ddots \\ & a_n^T & & & a_2^T \\\hline &&\vdots \end{bmatrix} \begin{bmatrix} x_1 \\ x_2 \\ \vdots \\ x_n \end{bmatrix} = 0 $$ where the matrix $\tilde{A}$ is size $n^2\times n^2$ and the vector $x$ is size $n^2\times 1$.
Note that a lot of the rows are identical. In particular, there are at most $n(n-1)/2$ unique rows. This tells us that the null space of $\tilde{A}$ is at least dimension $n^2-n(n-1)/2 = n(n+1)/2$. Each element of the null space of $\tilde{A}$ gives a solution to the original equation, so there are at least this many solutions.
So finding solutions to the original equation amounts to finding vectors in the null space of this new matrix (there are many existing libraries to do this).
3 by 3 case
I used mathematica and the above method to find all solutions $X$. We define entries of $A$ by $$ A = \begin{bmatrix} A1 & B1 & C1 \\ A2 & B2 & C2 \\ A3 & B3 & C3 \\ \end{bmatrix} $$
We input this to mathematica, compute the null space of $\tilde{A}$ as defined above, and then reshape vectors from the null space.
AA = {{A1, A2, A3}}\[Transpose];
BB = {{B1, B2, B3}}\[Transpose];
CC = {{C1, C2, C3}}\[Transpose];
A = ArrayFlatten[{{AA\[Transpose], 0, 0}, {BB\[Transpose],
AA\[Transpose], 0}, {CC\[Transpose], 0,
AA\[Transpose]}, {BB\[Transpose], AA\[Transpose], 0}, {0,
BB\[Transpose], 0}, {0, BB\[Transpose],
CC\[Transpose]}, {CC\[Transpose], 0, AA\[Transpose]}, {0,
CC\[Transpose], BB\[Transpose]}, {0, 0, CC\[Transpose]}}];
NA = NullSpace[A]
Then the solutions are linear combinations of the following: $$ X1= \left( \begin{array}{ccc} -\frac{\text{A3} \text{B2} \text{C1}-\text{A2} \text{B1} \text{C3}}{\text{C1} (\text{B2} \text{C1}-\text{B1} \text{C2})} & -\frac{\text{B2} (\text{B3} \text{C1}-\text{B1} \text{C3})}{\text{C1} (\text{B2} \text{C1}-\text{B1} \text{C2})} & -\frac{\text{C3}}{\text{C1}} \\ -\frac{\text{A1} \text{B1} \text{C3}-\text{A3} \text{B1} \text{C1}}{\text{C1} (\text{B2} \text{C1}-\text{B1} \text{C2})} & \frac{\text{B1} \text{B3} \text{C1}-\text{B1}^2 \text{C3}}{\text{C1} (\text{B2} \text{C1}-\text{B1} \text{C2})} & 0 \\ -\frac{\text{A1} \text{B2}-\text{A2} \text{B1}}{\text{B1} \text{C2}-\text{B2} \text{C1}} & 0 & 1 \\ \end{array} \right) $$
$$ X2= \left( \begin{array}{ccc} -\frac{\text{A2}}{\text{C1}} & -\frac{\text{B2}}{\text{C1}} & -\frac{\text{C2}}{\text{C1}} \\ \frac{\text{A1}}{\text{C1}} & \frac{\text{B1}}{\text{C1}} & 1 \\ 0 & 0 & 0 \\ \end{array} \right) $$
$$ X3= \left( \begin{array}{ccc} -\frac{\text{A3} \text{C2}-\text{A2} \text{C3}}{\text{B1} \text{C2}-\text{B2} \text{C1}} & -\frac{\text{B3} \text{C2}-\text{B2} \text{C3}}{\text{B1} \text{C2}-\text{B2} \text{C1}} & 0 \\ -\frac{\text{A1} \text{C3}-\text{A3} \text{C1}}{\text{B1} \text{C2}-\text{B2} \text{C1}} & -\frac{\text{B3} \text{C1}-\text{B1} \text{C3}}{\text{B2} \text{C1}-\text{B1} \text{C2}} & 0 \\ -\frac{\text{A2} \text{C1}-\text{A1} \text{C2}}{\text{B1} \text{C2}-\text{B2} \text{C1}} & 1 & 0 \\ \end{array} \right) $$