When does $f,g \in R[x]$ relatively prime imply $f,g \in R[[x]]$ relatively prime.
Revisiting this a year later, I think this question has a clean answer and that the sweet spot is a completely integrally closed $GCD$ domain, which means that in my original phrasing of the question (with $R[[x]]$ a GCD domain), the answer was actually no additional properties. I think the proof below works, please comment if you spot an error.
proposition: let $R$ be a $GCD$ domain. Then coprime polynomials in $R[x]$ remain coprime in $R[[x]]$ iff $R$ is completely integrally closed.
The forward direction is very easy. It suffices to show that if $R$ is not archimedean, then there exist coprime polynomials in $R[x]$ which are not coprime in $R[[x]]$ (since for GCD domains, being CIC and archimedean are the same thing). Let $b$ be a bounded element, i.e. a nonunit such that $\bigcap_n b^nR \supseteq (c) \supsetneq (0)$. Since $c$ is not a unit, clearly $b-x$ and $bc$ are coprime in $R$. But setting $G = \sum_n c b^n x^n \in R[[x]]$ we have $(b-x)G = bc$ so $(b-x)$ and $bc$ are not coprime in $R[[x]]$.
Now the converse.
Suppose that $f,g$ are coprime polynomials. Since $R[x]$ is a GCD domain, there exist $s,t \in R[x]$, and a nonzero $\lambda \in R$ such that $fs + gt = \lambda$. Suppose that $f,g$ have a common factor $H$ in $R[[x]]$. Thus $HU = f$ and $HV = g$ for some $U,V \in R[[x]]$. We aim to show that $H$ is a unit.
Set $Q = tV + sU$ so that $HQ = \lambda$.
This gives us the identities $\lambda U = fQ, \lambda V = gQ$. For $F \in R[[x]]$, let $c(F)$ denote the ideal generated by the coefficients of $F$, and let $I_v = (I^{-1})^{-1}$ denote the divisorial closure of an ideal $I \subset R$. From the Dedekind-Mertens content formula, we find that there exists an $n$ such that both $$c(f)c(Q)^n =\lambda c(Q)^{n-1}c(U)$$ $$c(g)c(Q)^n =\lambda c(Q)^{n-1}c(V)$$ From the coprimeness of $f$ and $g$ it follows, since the divisorial closure of an f.g. ideal in a GCD domain is the GCD of the generators, that $(c(f), c(g))^{-1} = (c(f), c(g))_v = R$. Moreover since $\big(c(f), c(g)\big) \subseteq \big(c(U), c(V)\big)$ we have that $\big(c(U), c(V)\big)_v = R$. Thus for any $q \in c(Q)$,
$$\big[\big( c(f), c(g)\big) \frac{q}{\lambda} c(Q)^{n-1} \big]_v \subseteq \big[\big( c(U), c(V)\big) c(Q)^{n-1} \big]_v $$ so that $$\frac{q}{\lambda} \big(c(Q)^{n-1}\big)_v \subseteq \big(c(Q)^{n-1}\big)_v$$ which implies that $\frac{q}{\lambda}$ is almost integral over $R$. If $R$ is completely integrally closed, we have thus shown that $\lambda$ divides $Q$, and $H\frac{Q}{\lambda} = 1$. Hence $H$ is a unit.