When NOT to call super() method when overriding?

The test you should do in your head is:

"Do I want all of the functionality of this method done for me, and then do something afterwards?" If yes, then you want to call super(), and then finish your method. This will be true for "important" methods such as onDraw(), which handles lots of things in the background.

If you only want some of the functionality (as with most methods that you will override) then you probably don't want to call super().

Well Xavi gave a better answer.. but you probably might be knowing what does super() do when called in a overridden method... it ads what have you done with the default behaviour..

e.g:

onDraw() 

method in view class when overridden.. you draw something before saying super.onDraw() it appears once the view is fully drawn.. so here calling super is necessary since android has some critically important things to do (like onCreate())

but at the same time

onLongClick()

when you override this you don't want to call super because it brings up a dialog with list of options for a EditText or any other similar view.. Thats the basic diff.. you have choice to leave it some times.. but for other methods like onCreate() , onStop() you should let the OS handle it..

By calling the super method, you're not overriding the behavior of the method, you're extending it.

A call to super will perform any logic the class you're extending has defined for that method. Take into account that it might be important the moment when you call super's implementation in your method overriding. For instance:

public class A { 
    public void save() { 
         // Perform save logic
    }
}

public class B extends A {
    private Object b;
    @Override
    public void save() { 
        super.save(); // Performs the save logic for A
        save(b); // Perform additional save logic
    }
}

A call to B.save() will perform the save() logic for both A and B, in this particular order. If you weren't calling super.save() inside B.save(), A.save() wouldn't be called. And if you called super.save() after save(b), A.save() would be effectively performed afterwards B.save().

If you want to override super's behavior (that is, fully ignore its implementation and provide it all yourself), you shouldn't be calling super.

In the SAXParser example you provide, the implementations of DefaultHandler for those methods are just empty, so that subclasses can override them and provide a behavior for those methods. In the javadoc for this method this is also pointed out.

public void startElement (String uri, String localName,
    String qName, Attributes attributes) throws SAXException {
    // no op
}

About the super() default call in code generated by IDEs, as @barsju pointed out in his comment, in each constructor there's an implicit call to super() (even if you don't write it in your code), which means, in that context, a call to super's default constructor. The IDE just writes it down for you, but it would also get called if you removed it. Also notice that when implementing constructors, super() or any of its variants with arguments (i.e. super(x,y,z)) can only be called at the very beginning of the method.

How do they know when you must call super and when you can omit it calling?

Usually, if a special API method has a critical meaning to the underlying framework context life cycle, it will always be explicitly stated and highlighted in the API documentation, like the Activity.onCreate() API documentation. Moreover, if the API follows a robust design, it should throw some exceptions to alert the consumer developer at project compile time, and make sure it will not generate a fault at run time.

If this is not explicitly stated in the API documentation, then it is quite safe for the consumer developer to assume the API method is not mandatory to call when overriding it. It is up to the consumer developer to decide whether to use the default behavior (call the super method) or completely override it.

If the condition is permitted (I love open-source software), the consumer developer can always check out the API source code and see how the method is actually written under the hood. Check out Activity.onCreate() source and DefaultHandler.startElement() source for example.