Why does a Java class compile differently with a blank line?

Basically, line numbers are kept for debugging, so if you change your source code the way you did, your method starts at a different line and the compiled class reflects the difference.

As well as any line number details for debugging, your manifest may also store the build time and date. This will naturally be different every time you compile.

The assumption that "Java ignores blank lines" is wrong. Here is a code snippet that behaves differently depending on the number of empty lines before the method main:

class NewlineDependent {

  public static void main(String[] args) {
    int i = Thread.currentThread().getStackTrace()[1].getLineNumber();
    System.out.println((new String[]{"foo", "bar"})[((i % 2) + 2) % 2]);
  }
}

If there are no empty lines before main, it prints "foo", but with one empty line before main, it prints "bar".

Since the runtime behavior is different, the .class files must be different, regardless of any timestamps or other metadata.

This holds for every language that has access to the stack frames with line numbers, not only for Java.

Note: if it's compiled with -g:none (without any debugging information), then the line numbers will not be included, getLineNumber() always returns -1, and the program always prints "bar", regardless of the number of line breaks.

You can see the change by using javap -v which will output verbose information. Like other already mentioned the difference will be in line numbers:

$ javap -v HelloWorld.class > with-line.txt
$ javap -v HelloWorld.class > no-line.txt
$ diff -C 1 no-line.txt with-line.txt
*** no-line.txt 2018-10-03 11:43:32.719400000 +0100
--- with-line.txt       2018-10-03 11:43:04.378500000 +0100
***************
*** 2,4 ****
    Last modified 03-Oct-2018; size 373 bytes
!   MD5 checksum 058baea07fb787bdd81c3fb3f9c586bc
    Compiled from "HelloWorld.java"
--- 2,4 ----
    Last modified 03-Oct-2018; size 373 bytes
!   MD5 checksum 435dbce605c21f84dda48de1a76e961f
    Compiled from "HelloWorld.java"
***************
*** 50,52 ****
        LineNumberTable:
!         line 3: 0
        LocalVariableTable:
--- 50,52 ----
        LineNumberTable:
!         line 4: 0
        LocalVariableTable:

More precisely the class file differs in the LineNumberTable section:

The LineNumberTable attribute is an optional variable-length attribute in the attributes table of a Code attribute (§4.7.3). It may be used by debuggers to determine which part of the code array corresponds to a given line number in the original source file.

If multiple LineNumberTable attributes are present in the attributes table of a Code attribute, then they may appear in any order.

There may be more than one LineNumberTable attribute per line of a source file in the attributes table of a Code attribute. That is, LineNumberTable attributes may together represent a given line of a source file, and need not be one-to-one with source lines.