Apple - Why does OS X want me to "upgrade" from El Capitan to Yosemite Beta 4?
The App Store can get confused for several reasons. I find it silly as well when it's confused but untangling things is a bit prickly and removes the humor in most cases :-(
The first and most likely is that somewhere on your filesystem an older version of the Yosemite installer exists and the store is seeing an "update" to offer. It's not really designed for the case where a downloaded app then installs the OS and clearly doesn't contemplate that the installer you "update" will in fact not run since downgrades do not happen by design on OS X.
Here are some of the various situations where clearing caches might help as well if you can't find the app itself and compress/delete/move it to a folder where Spotlight does not index it:
- How can I hide / remove updates from the Mac App Store?
- Remove application from App Store's Update section
- How to remove deleted app from OS X update list?
My personal favorite is to edit the App itself to remove the _MASreceipt files that indicate an app came from the Mac App Store itself:
- How can I opt out of updates for one app when using the App Store?
- Mac App Store - how to check which account was used to buy app