Xcode Source Control showing multiple Working Copies

Solved this by deleting xccheckout file under

ProjectName.xcodeproj > project.xcworkspace > xcshareddata

This had contained references to the previous repos.

I have removed old repo using following steps.

ProjectName.xcodeproj -> Show Package Contents
project.xcworkspace -> Show Package Contents
xcshareddata
Open .xcscmblueprint file using any text editor
Remove all unrequited repo from following location DVTSourceControlWorkspaceBlueprintWorkingCopyRepositoryLocationsKey DVTSourceControlWorkspaceBlueprintWorkingCopyStatesKey DVTSourceControlWorkspaceBlueprintWorkingCopyPathsKey DVTSourceControlWorkspaceBlueprintRemoteRepositoriesKey
Save file and open Xcode again

Note : If your project have WorkSpace then Direct click on ProjectName.xcworkspace instead of ProjectName.xcodeproj

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