C/C++ library for reading MIDI signals from a USB MIDI device
Maybe the Jack source code may help too. It's a sound driver for Posix compatible systems with a lot of possibilities and supports USB and Firewire audio devices.
PortMidi is another open source cross-platform MIDI I/O library worth checking out. On the other hand, if you are working on a sysex type of app, then direct Win32 works easily enough.
Just came across another open source cross-platform framework that includes MIDI support: Juce.
Also, I should note that there isn't anything special about a USB connected MIDI device. It will still be presented as a MIDI device in Windows and you will use standard MIDI APIs (mmsystem) to communicate with it.
[July 2014] I just came across RtMidi that looks to be a nice, compact, open source cross-platform C++ library.
Check out the open source project LMMS. It's a music studio for Linux that includes the ability to use MIDI keyboards with software instruments. If you dig around in source files with 'midi' in the name, you'll probably find what you're looking for.