Darknet YOLO image size

You do not need to resize the images, you can directly change the values in darknet.cfg file.

1. When you open darknet.cfg (yolo-darknet.cfg) file, you can all
   hyper-parameters and their values.
2. As showed in your cfg file images dimensions are (416,416)->(weight,height), you can change the values, so that darknet will automatically resize the images before training.
3. Since the images have high dimensions, you can adjust batch and sub-division values (lower the values 32,16,8 . it has to be multiples of 2), so that darknet will not crash (memory allocation error)

It is very common to resize images before training. 416x416 is slightly larger than common. Most imagenet models resize and square the images to 256x256 for example. So I would expect the same here. Trying to train on 6000x4000 is going to require a farm of GPUs. The standard process is to square the image to the largest dimension (height, or width), padding with 0's on the shorter side, then resizing using standard image resizing tools like PIL.

You don't need to resize your database images. PJReddie's YOLO architecture does it by itself keeping the aspect ratio safe (no information will miss) according to the resolution in .cfg file. For Example, if you have image size 1248 x 936, YOLO will resize it to 416 x 312 and then pad the extra space with black bars to fit into 416 x 416 network.

You don't have to resize it, because Darknet will do it instead of you!

It means you really don't need to do that and you can use different image sizes during your training. What you posted above is just network configuration. There should be full network definition as well. And the height and the width tell you what's the network resolution. And it also keeps aspect ratio, check e.g this.