How to remove selected commit log entries from a Git repository while keeping their changes?

git-rebase(1) does exactly that.

$ git rebase -i HEAD~5

git awsome-ness [git rebase --interactive] contains an example.

1. Don't use git-rebase on public (remote) commits.
2. Make sure your working directory is clean (commit or stash your current changes).
3. Run the above command. It launches your $EDITOR.
4. Replace pick before C and D by squash. It will meld C and D into B. If you want to delete a commit then just delete its line.

If you are lost, type:

$ git rebase --abort  

# detach head and move to D commit
git checkout <SHA1-for-D>

# move HEAD to A, but leave the index and working tree as for D
git reset --soft <SHA1-for-A>

# Redo the D commit re-using the commit message, but now on top of A
git commit -C <SHA1-for-D>

# Re-apply everything from the old D onwards onto this new place 
git rebase --onto HEAD <SHA1-for-D> master

Here is a way to remove a specific commit id knowing only the commit id you would like to remove.

git rebase --onto commit-id^ commit-id

Note that this actually removes the change that was introduced by the commit.